broadinstitute / hellbender / 2388
81%
master: 81%

LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran
Jobs 3
Files 508
Run time 486min
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cmnbroad 
Implementation of GATKRead.getSAMString.

81 of 81 new or added lines in 5 files covered. (100.0%)

21478 of 26816 relevant lines covered (80.09%)

1.73 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/GoogleGenomicsReadToGATKReadAdapter.java

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/FeatureInput.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/ReferenceContext.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/ReferenceDataSource.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/MergeTails.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/SplitNCigarReads.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/ReferenceDataflowSource.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/engine/GATKTool.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/bqsr/BaseRecalibrator.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/utils/pairhmm/PairHMM.java
5
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/bqsr/RecalibrationEngine.java
5
100.0
 src/main/java/org/broadinstitute/hellbender/utils/variant/VariantContextVariantAdapter.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ValidateVariants.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter.java
9
100.0
 src/main/java/org/broadinstitute/hellbender/utils/haplotype/Haplotype.java
11
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/bqsr/ReadRecalibrationInfo.java
11
100.0
 src/main/java/org/broadinstitute/hellbender/utils/MannWhitneyU.java
11
100.0
 src/main/java/org/broadinstitute/hellbender/utils/pileup/PileupElement.java
12
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/RefAPISource.java
12
100.0
 src/main/java/org/broadinstitute/hellbender/utils/BaseUtils.java
13
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/DataflowCommandLineProgram.java
15
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/GoogleGenomicsReadToGATKReadAdapter.java
16
100.0
 src/main/java/org/broadinstitute/hellbender/utils/SequenceDictionaryUtils.java
18
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/ArtificialReadUtils.java
18
100.0
 src/main/java/org/broadinstitute/hellbender/utils/test/BaseTest.java
22
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/OverhangFixingManager.java
23
100.0
 src/main/java/org/broadinstitute/hellbender/utils/MathUtils.java
28
100.0
 src/main/java/org/broadinstitute/hellbender/exceptions/UserException.java
31
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/AssemblyResultSet.java
35
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/AlignmentUtils.java
44
100.0
 src/main/java/org/broadinstitute/hellbender/utils/Utils.java
Jobs
ID Job ID Ran Files Coverage
1 2388.1 (CLOUD=mandatory) 0
17.0
 Travis Job 2388.1
3 2388.3 (CLOUD=false) 0
78.09
 Travis Job 2388.3
4 2388.4 (DATAFLOW_RUNNER=SparkPipelineRunner CLOUD=false SPARK=false) 0
77.78
 Travis Job 2388.4
Source Files on build 2388
Detailed source file information is not available for this build.