481
81%

Ran 06 Jul 2020 10:56PM UTC

Jobs 1

Files 12

Run time 3s

Badge

Embed ▾

pending completion

Build # 481

Build Type

push

travis-ci-com

Committed by

web-flow

Commit Message

Loading TIFF segmentation labels (#110)

* added option to load a 'free' directory of images into an xarray based off of filename prefixed

* expanded test function for load_imgs_from_dir to cover new functionality

* added tiff to xr_labels import/conversion function

* fixed usage of  in  test function

* corrected test function for load_imgs_from_dir and fixed xarray shape error for use_filename=True case

* added example usage of label tif loading to postprocessing notebook

* added directory validation function, moved new functionality to new function, renamed load_imgs_from_dir to load_imgs_from_tree and changed all references accordingly.

* reconfigured test functions, reworked path validation, and removed load_axis as an argument from img loading functions

* passes test locally but not on travis, added diagnostic print out on validate_paths function, and fixed old description in extract_single_cell_data

* restructured path validation to work more generally, and added test function to path validation

* fixed some pep8 mistakes, corrected missed notebook_test coverage, and added 'use docker scope' warning to preprocessing notebooks

Co-authored-by: Adam Kagel <kagelosaurus@gmail.com>

Run Details

598 of 844 relevant lines covered (70.85%)

0.71 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	481.1 (MPLBACKEND=Agg)	06 Jul 2020 10:56PM UTC	0	70.85	Travis Job 481.1

Source Files on build 481

Detailed source file information is not available for this build.

angelolab / segmentation / 481
81%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 481

angelolab / segmentation / 481 81%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 481

angelolab / segmentation / 481
81%

README BADGES
x