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angelolab / segmentation / 481
81%

Build:
DEFAULT BRANCH: master
Ran 06 Jul 2020 10:56PM UTC
Jobs 1
Files 12
Run time 3s
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Loading TIFF segmentation labels (#110)

* added option to load a 'free' directory of images into an xarray based off of filename prefixed

* expanded test function for load_imgs_from_dir to cover new functionality

* added tiff to xr_labels import/conversion function

* fixed usage of  in  test function

* corrected test function for load_imgs_from_dir and fixed xarray shape error for use_filename=True case

* added example usage of label tif loading to postprocessing notebook

* added directory validation function, moved new functionality to new function, renamed load_imgs_from_dir to load_imgs_from_tree and changed all references accordingly.

* reconfigured test functions, reworked path validation, and removed load_axis as an argument from img loading functions

* passes test locally but not on travis, added diagnostic print out on validate_paths function, and fixed old description in extract_single_cell_data

* restructured path validation to work more generally, and added test function to path validation

* fixed some pep8 mistakes, corrected missed notebook_test coverage, and added 'use docker scope' warning to preprocessing notebooks

Co-authored-by: Adam Kagel <kagelosaurus@gmail.com>

598 of 844 relevant lines covered (70.85%)

0.71 hits per line

Jobs
ID Job ID Ran Files Coverage
1 481.1 (MPLBACKEND=Agg) 06 Jul 2020 10:56PM UTC 0
70.85
Travis Job 481.1
Source Files on build 481
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