openvax / isovar / 703
93%
master: 93%

LAST BUILD BRANCH: no-more-py27-on-travis
DEFAULT BRANCH: master
Ran
Jobs 1
Files 54
Run time 5s
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703

Pull #104

travis-ci

web-flow 
slight refactoring of CLI to make it easier for reuse from Vaxrank
Pull Request #104: Major rewrite to enable use of newer pysam, fix several bugs, and add filtering options

1221 of 1221 new or added lines in 44 files covered. (100.0%)

1824 of 1964 relevant lines covered (92.87%)

0.93 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
93.75
 isovar/allele_read_helpers.py
1
94.44
 isovar/cli/isovar_main.py
1
94.03
 -1.68% isovar/dataframe_builder.py
1
96.3
 isovar/variant_orf_helpers.py
2
94.29
 -2.01% isovar/effect_prediction.py
3
91.18
 -8.82% isovar/cli/rna_args.py
3
88.24
 2.25% isovar/translation.py
3
85.71
 isovar/translation_helpers.py
4
92.0
 isovar/dataframe_helpers.py
4
90.91
 isovar/filtering.py
4
91.11
 isovar/variant_sequence_creator.py
5
87.8
 isovar/allele_read.py
5
92.19
 isovar/protein_sequence.py
6
92.31
 isovar/protein_sequence_creator.py
7
91.86
 isovar/variant_sequence.py
7
81.58
 isovar/variant_sequence_helpers.py
12
94.76
 isovar/isovar_result.py
27
82.0
 isovar/read_collector.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
88.24
 2.25% isovar/translation.py
Jobs
ID Job ID Ran Files Coverage
2 703.2 54
92.87
 Travis Job 703.2
Source Files on build 703