neuropoly / spinalcordtoolbox / 10760
67%
master: 59%

LAST BUILD BRANCH: lr/coverage
DEFAULT BRANCH: master
Ran
Jobs 3
Files 647
Run time 29min
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10760

Pull #2218

travis-ci

web-flow 
Merge branch 'master' into nipin/msct_reg-refactoring
Pull Request #2218: Refactoring to allow use of im AND seg in the registration process

134 of 134 new or added lines in 3 files covered. (100.0%)

34451 of 115245 relevant lines covered (29.89%)

0.42 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
9
67.15
 -20.97% scripts/sct_register_to_template.py
13
77.31
 -3.99% scripts/sct_register_multimodal.py
92
28.72
 -23.13% scripts/msct_register.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
33.33
 -1.33% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/csc.py
1
93.18
 -2.27% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/signal/__init__.py
1
33.73
 -0.4% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/ndimage/interpolation.py
1
79.71
 -1.45% scripts/sct_dice_coefficient.py
2
36.9
 -0.3% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/linalg/linalg.py
2
51.06
 -0.38% scripts/msct_parser.py
2
92.76
 -1.32% scripts/sct_apply_transfo.py
2
88.71
 -3.23% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/linalg/blas.py
2
30.0
 -5.0% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/linalg/misc.py
2
88.89
 -11.11% spinalcordtoolbox/centerline/curve_fitting.py
2
63.93
 -1.64% spinalcordtoolbox/metadata.py
2
34.57
 -1.23% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/_lib/_util.py
3
73.67
 -1.0% scripts/sct_compute_hausdorff_distance.py
3
52.82
 -0.46% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/nibabel/nifti1.py
3
58.59
 -1.17% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/index_tricks.py
3
82.29
 -3.13% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/core/_methods.py
3
20.23
 -0.87% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/arraypad.py
3
85.71
 -4.29% scripts/sct_concat_transfo.py
3
27.94
 -0.14% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/generic.py
4
49.46
 -4.3% spinalcordtoolbox/centerline/core.py
4
44.64
 -1.79% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/indexes/numeric.py
4
90.86
 -2.29% scripts/sct_create_mask.py
5
30.33
 -0.51% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/series.py
6
62.5
 -1.7% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/core/fromnumeric.py
6
65.95
 -1.17% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/nibabel/volumeutils.py
6
77.31
 -3.99% scripts/sct_register_multimodal.py
7
17.12
 -1.36% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/utils.py
8
74.77
 -3.74% spinalcordtoolbox/reports/slice.py
8
57.89
 -5.26% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/twodim_base.py
9
44.54
 -3.78% scripts/sct_crop_image.py
9
36.77
 -0.48% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/indexes/base.py
10
42.64
 -1.0% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/internals/managers.py
10
13.43
 -4.63% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/csr.py
10
31.65
 -0.84% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/function_base.py
12
66.67
 -13.79% scripts/sct_straighten_spinalcord.py
12
15.63
 -4.17% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/signal/windows/windows.py
14
15.91
 -15.91% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/linalg/decomp_svd.py
14
9.15
 -1.06% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/stats/stats.py
17
55.27
 -2.89% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/core/numeric.py
17
24.28
 -3.75% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/base.py
17
31.44
 -4.02% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/polynomial.py
20
30.46
 -5.08% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/ndimage/filters.py
21
58.24
 -23.08% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/dipy/denoise/noise_estimate.py
21
63.48
 -3.65% spinalcordtoolbox/image.py
23
24.73
 -12.64% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/data.py
26
38.07
 -2.41% scripts/sct_utils.py
30
47.02
 -9.93% scripts/sct_maths.py
36
74.37
 -13.0% spinalcordtoolbox/reports/qc.py
42
12.7
 -16.67% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/sputils.py
44
11.91
 -15.88% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/histograms.py
45
11.43
 -25.71% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/optimize/_minimize.py
52
14.48
 -17.93% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/coo.py
55
28.72
 -23.13% scripts/msct_register.py
60
23.93
 -25.64% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/matrixlib/defmatrix.py
70
10.5
 -10.36% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/compressed.py
79
67.15
 -20.97% scripts/sct_register_to_template.py
226
5.74
 -18.8% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/optimize/optimize.py
Jobs
ID Job ID Ran Files Coverage
1 10760.1 2131
26.47
 Travis Job 10760.1
2 10760.2 (SCT_MINICONDA=2) 76
64.46
 Travis Job 10760.2
3 10760.3 (SCT_MINICONDA=2) 108
64.7
 Travis Job 10760.3
Source Files on build 10760