vanvalenlab / deepcell-tf / 382

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Object-based and Pixel-based Segmentation Metrics (#76)

* Implemented function to calculate performance stats on object IoU matrix and to take a 3D stack and tile to a padded 2D stack.

* Implement intersection based screening to speed up object based stats

* Implement Metrics class to facilitate generating statistic outputs for a model

* Implement cost matrix and graph theory with networkx as a dependency

* Integrate new ObjectAccuracy approach with existing Metrics object

* Add networkx to requirements for graph theory accuracy testing

* Update example notebook for metrics and new print outputs

340 of 340 new or added lines in 2 files covered. (100.0%)

2016 of 2945 relevant lines covered (68.46%)

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