broadinstitute / viral-ngs / 6815

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travis-ci

Adding commands for working with kmer sets using the KMC tool. (#854)

Adding commands for working with kmer sets using the KMC tool.  Some planned uses: recovering currently depleted but relevant reads; evaluating optimality of assemblies and finding potentially fillable gaps; generating fine-grained reports on the occurrence in the known reference sequences of raw read kmers.

390 of 2711 branches covered (14.39%)

299 of 299 new or added lines in 7 files covered. (100.0%)

2088 of 6641 relevant lines covered (31.44%)

1.05 hits per line