820
79%

Ran 18 Oct 2018 04:04AM UTC

Jobs 3

Files 98

Run time 1min

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Build # 820

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Fix Simulator initials_dict when set by array (#377)

The `Simulator` class method `initials_dict` returns initial conditions
as a dictionary, mostly for use by network-free simulators like NFsim.
When initial conditions are set by an array or by a list, species which
were not explicitly set using `Initial()` in the model are ignored.

This would only affect users of the `BngSimulator`, which uses this
method, or anyone who called this method directly after setting
initials with an array or list.

This PR fixes the issue by returning a dictionary with values from the
array. This requires a species list for the model, so a `ValueError`
is raised where this is not available/`generate_equations` hasn't been
called yet.

Run Details

7230 of 9127 relevant lines covered (79.22%)

2.36 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	820.1 (PYVER=2.7)	18 Oct 2018 04:04AM UTC	78.71	Travis Job 820.1
2	820.2 (PYVER=3.6)	18 Oct 2018 04:04AM UTC	78.46	Travis Job 820.2
3	820.3 (PYVER=3.7)	18 Oct 2018 04:06AM UTC	78.46	Travis Job 820.3

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