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googlegenomics / gcp-variant-transforms / 1358
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DEFAULT BRANCH: master
Ran 11 Oct 2018 07:39PM UTC
Jobs 1
Files 95
Run time 7s
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update the default value for number of bases per shard (#375)

Change the default value of number_of_bases_per_shard from 10,000 to 1,000,000.

For large datasets (tested with `bigquery-public-data:human_genome_variants.platinum_genomes_deepvariant_variants_20180823`), the run time for BigQuery to VCF shards are almost the same (45min), while the time for composing the shards are significantly dropped (from 1.8h to 1 min).
Issues: 85
Tested: manually ran BQ to VCF.

6223 of 7087 relevant lines covered (87.81%)

0.88 hits per line

Jobs
ID Job ID Ran Files Coverage
1 1358.1 11 Oct 2018 07:39PM UTC 0
87.81
Travis Job 1358.1
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