dnanexus-rnd / GLnexus / 1873

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travis-ci

QC squeezing (#136)

Add a setting to reduce pVCF size...

...by reporting only GT and DP FORMAT fields, with DP rounded down to a power of two, in cells derived from gVCF reference bands. Inspired by spVCF.

For now this is opt-in by command-line flag --squeeze, -S but in time we plan to enable it by default.

56 of 56 new or added lines in 4 files covered. (100.0%)

4097 of 4392 relevant lines covered (93.28%)

957615.38 hits per line