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broadinstitute / viral-ngs / 6350
23%

Build:
DEFAULT BRANCH: master
Ran 23 Jul 2018 03:04PM UTC
Jobs 2
Files 41
Run time 9min
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tomkinsc
dxWDL 0.72: revert WDLs to unbound task inputs (#857)

* update dxWDL to 0.71 and cromwell to 33.1

* remove boilerplate workflow inputs that simply echo task inputs and improve user UI/API in dnanexus

* update to 0.72 and add verbose flag

* also revert dx test input jsons to original stage spec (except for scattered demux-plus)

* fix cromwell-local input json for unit tests, also clean up first stage of assemble_denovo_with_deplete* workflows

2047 of 6258 relevant lines covered (32.71%)

1.03 hits per line

Jobs
ID Job ID Ran Files Coverage
5 6350.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 23 Jul 2018 03:14PM UTC 0
71.58
Travis Job 6350.5
6 6350.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 23 Jul 2018 03:04PM UTC 0
32.71
Travis Job 6350.6
Source Files on build 6350
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