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broadinstitute / viral-ngs / 6225
23%

Build:
DEFAULT BRANCH: master
Ran 10 Jul 2018 07:36PM UTC
Jobs 2
Files 41
Run time 9min
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allow sequencing_center to be passed as an optional input to demux_launcher (#844)

* allow sequencing_center to be passed as an optional input to demux_launcher

allow sequencing_center to be passed as an optional input to demux_launcher; this allows each job spawning a demux (uploader laptops, etc.) to set the sequencing center at upload time

* extend travis cache timeout

* make safe sequencing_center value passed to illumina.py, mention to avoid spaces in the DNAnexus applet demux_launcher

spaces may cause issues for the bash-like demux_launcher applet script

3 of 3 new or added lines in 1 file covered. (100.0%)

2047 of 6255 relevant lines covered (32.73%)

1.03 hits per line

Jobs
ID Job ID Ran Files Coverage
5 6225.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 10 Jul 2018 07:46PM UTC 0
71.58
Travis Job 6225.5
6 6225.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 10 Jul 2018 07:36PM UTC 0
32.73
Travis Job 6225.6
Source Files on build 6225
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