Ran
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Jobs
2
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Files
41
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Run time
9min
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travis-ci
<a href="https://github.com/broadinstitute/viral-ngs/commit/<a class=hub.com/broadinstitute/viral-ngs/commit/a30825cdbf2940969181c8815d4a9ed48b9c5743">a30825cdb<a href="https://github.com/broadinstitute/viral-ngs/commit/a30825cdbf2940969181c8815d4a9ed48b9c5743">">mlin&#39;s new demux launcher (#838) * import wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * Update demux_launcher.yml * wip * wip * Revert &quot;wip" This reverts commit </a><a class="double-link" href="https://github.com/broadinstitute/viral-ngs/commit/<a class="double-link" href="https://github.com/broadinstitute/viral-ngs/commit/037cf6b52277bbd3f8384e9096259d51682f1701">037cf6b52</a>">037cf6b52</a><a href="https://github.com/broadinstitute/viral-ngs/commit/a30825cdbf2940969181c8815d4a9ed48b9c5743">. * wip * Create README.md * Update README.md * Update README.md * wip * Update README.md * add demux autoscaling to mlin's launcher * place L# lane dirs under reads/; give applet title * comment out auto-scaling for now comment out auto-scaling, since each task in the resulting workflow seem s to inheir the instance type specified rather than use the on specified in the task runtime block * set dx-jobutil-add-output class to jobref for subjob propagation call * rename inputs to reflect WDLs with workflow-level inputs * rename demux input * reintroduce (stage-specific) autoscaling, set Q20 min base Q for NovaSeq runs, change demux_outputs class to array:file * mem1_hdd2_x32 -> mem1_ssd2_x36 * change instance type escaping * change workflow instance type mapping spec (key=val for workflows) * debug file propagation * remove array spec from output aggregation * jobref array * reduce demux threads for NovaSeq case; propagate based on jobref * change output field name in applet spec * remove TODO comment * change output collection class types * revert to array:file * restore array:file in propagate_outputs * only propagate files, and only from the reads subdir * dxWDL 0.68.1 -> 0.69 * decrease instance size a bit for HiSeq4k demux
2047 of 6255 relevant lines covered (32.73%)
1.03 hits per line
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
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