9081
67%

Ran 07 Jul 2018 05:49PM UTC

Jobs 4

Files 73

Run time 3min

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Build # 9081

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

sct_propseg: Now possible to rescale data header to be able to segment non-human spinal cord (mice, rats, etc.) (#1903)

* reorganized usage

* minor usage update

* started to implement header-based rescaling (WIP)

* now creating file in temp folder, and fixed input to propseg function

* added flag to enable/disable the algorithm that corrects the segmentation

* added doc

* refactored to follow variable conventions

* finished implementing the major part of the rescaling

* fixed issue with output file name

* moved import at the beginning

* added flag -rescale

* fixing output path issues (unfinished)

* fixed output filename

* fixed typo in usage

* does not rename the centerline if rescaled is on

* removed TODO

* added TODO to deal with removal of temp file (not urgent)

Run Details

9907 of 17001 relevant lines covered (58.27%)

2.33 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	9081.1 (SCT_MINICONDA=2 SCT_VERBOSE_INSTALL=1 MPLBACKEND=Agg)	07 Jul 2018 05:49PM UTC	58.26	Travis Job 9081.1
2	9081.2 (SCT_MINICONDA=2 MPLBACKEND=Agg)	07 Jul 2018 05:49PM UTC	58.26	Travis Job 9081.2
3	9081.3 (SCT_MINICONDA=2 MPLBACKEND=Agg)	07 Jul 2018 05:52PM UTC	58.27	Travis Job 9081.3
4	9081.4 (SCT_MINICONDA=2 SCT_VERBOSE_INSTALL=1 MPLBACKEND=Agg)	07 Jul 2018 05:53PM UTC	58.27	Travis Job 9081.4

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