6019
23%

Ran 22 Jun 2018 02:02PM UTC

Jobs 2

Files 39

Run time 11min

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Build # 6019

Build Type

push

travis-ci

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Commit Message

Merge pull request #791 from broadinstitute/ct-bwa-deplete-unpaired-tolerant

refactoring and optimizations related to bwa-based depletion

Run Details

119 of 119 new or added lines in 6 files covered. (100.0%)

2007 of 6056 relevant lines covered (33.14%)

1.02 hits per line

Lines	Coverage	∆	File
1	85.71	-1.05%	tools/last.py
1	89.41	-0.35%	tools/samtools.py
2	69.05	1.07%	tools/bwa.py
9	83.43	0.07%	read_utils.py
12	80.1	-1.79%	taxon_filter.py

Lines	Coverage	∆	File
1	69.05	1.07%	tools/bwa.py
1	80.1	-1.79%	taxon_filter.py

ID	Job ID	Ran	Files	Coverage
5	6019.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure])	22 Jun 2018 02:13PM UTC	45	69.91	Travis Job 6019.5
6	6019.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure])	22 Jun 2018 02:02PM UTC	39	33.14	Travis Job 6019.6