ezorita / mapper / 43

97%

master: 97%

push

travis-ci

Merge pull request #54 from ezorita/43-input-stream

This pull request introduces three new libraries:
- gstack defines a generic stack structure.
- seqread defines a structure for sequence reads, which stores the tag, seq and qscore.
- io library to handle i/o operations, like stream reading.

The main mapping routine has been updated to use iostream to read the query file and echo the input sequences in order to stdout.

287 of 287 new or added lines in 5 files covered. (100.0%)

2502 of 2582 relevant lines covered (96.9%)

444941.67 hits per line