4831
23%

Ran 01 Nov 2017 02:06PM UTC

Jobs 2

Files 44

Run time 3min

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Build # 4831

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

docker build optimization (#708)

This changes how the docker image is built. Changes include:

- Change from installing the viral-ngs conda package (easy-deploy-viral-ngs.sh setup) to something closer to setup-git (that uses the current working copy instead of cloning fresh from github).
- Divorce the conda build & deploy steps from the docker build & deploy -- put each in their own separate space in the Travis build matrix and cut end-to-end build time in half.
- Separate out basic infrastructural setup in the Dockerfile to a separate repository such that this Dockerfile only installs the components specific to viral-ngs and its dependencies. This also reduces build time by caching all of the apt-get steps.
- Move Dockerfile to root of git repo. This allows for a direct build of either the github URI or the working copy (e.g. docker build . or docker build https://github.com/broadinstitute/viral-ngs.git).

Run Details

5514 of 8158 relevant lines covered (67.59%)

1.35 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	4831.1 (PERFORM_TESTING=true)	01 Nov 2017 02:06PM UTC	0	67.46	Travis Job 4831.1
2	4831.2 (PERFORM_TESTING=true)	01 Nov 2017 02:10PM UTC	0	67.23	Travis Job 4831.2

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