bigdatagenomics / adam / 2352
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 140
Run time 12min
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2352

Pull #1684

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/5ee6c6e0f7cbdd87341972b0267d7784a63bd1be">5ee6c6e0f<a href="https://github.com/bigdatagenomics/adam/commit/5ee6c6e0f7cbdd87341972b0267d7784a63bd1be">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/ea8a23d68d2e3645ce8c8c43f473a65317e9c662">ea8a23d68</a>">ea8a23d68</a><a href="https://github.com/bigdatagenomics/adam/commit/5ee6c6e0f7cbdd87341972b0267d7784a63bd1be"> into 511f9253f">511f9253f</a>
Pull Request #1684: [ADAM-1682] Add variant quality field.

18 of 18 new or added lines in 1 file covered. (100.0%)

6222 of 7462 relevant lines covered (83.38%)

6.64 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
83.47
 0.32% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
95.77
 -1.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
69.12
 -0.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
98.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
88.37
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
2
91.67
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
65.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
96.63
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
90.29
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
66.23
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
82.12
 -0.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
62.74
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
74.07
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
4
83.49
 -3.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
8
93.8
 -0.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
77
83.47
 0.32% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
Jobs
ID Job ID Ran Files Coverage
1 2352.1 140
83.03
2 2352.2 140
83.03
3 2352.3 140
83.02
4 2352.4 140
83.02
5 2352.5 140
83.05
6 2352.6 140
83.03
7 2352.7 140
83.05
8 2352.8 140
83.03
Source Files on build 2352
Coverage ∆ File Lines Relevant Covered Missed Hits/Line