bigdatagenomics / adam / 2280
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 141
Run time 2min
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2280

Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/1e973346b6323d0d75a8a1d7523a4789e7e276ab">1e973346b<a href="https://github.com/bigdatagenomics/adam/commit/1e973346b6323d0d75a8a1d7523a4789e7e276ab">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/0e60b28b9c75ea3031059c22fdbaa43bad63bba3">0e60b28b9</a>">0e60b28b9</a><a href="https://github.com/bigdatagenomics/adam/commit/1e973346b6323d0d75a8a1d7523a4789e7e276ab"> into 7449b14ca">7449b14ca</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

305 of 305 new or added lines in 15 files covered. (100.0%)

6290 of 7548 relevant lines covered (83.33%)

6.64 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
5
94.2
 -0.81% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
14
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala
26
65.79
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
27
52.63
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
62.5
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
95.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
84.13
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
99.27
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
58.33
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/JavaADAMContext.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
75.93
 3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
93.26
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
85.32
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
62.26
 -0.47% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
4
81.63
 -0.42% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
8
86.41
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
8
85.37
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
12
89.24
 -0.57% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
38
94.2
 -0.81% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
42
82.35
 -0.28% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
81
72.87
 1.52% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2280.1 141
82.85
2 2280.2 141
82.85
3 2280.3 141
82.84
4 2280.4 141
82.84
5 2280.5 141
83.12
6 2280.6 141
83.12
7 2280.7 141
83.11
8 2280.8 141
83.11
Source Files on build 2280
Coverage ∆ File Lines Relevant Covered Missed Hits/Line