bigdatagenomics / adam / 2199
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 154
Run time 3min
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2199

Pull #1528

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/358225c5a25085f4b06cc1caf7af66921319e192">358225c5a<a href="https://github.com/bigdatagenomics/adam/commit/358225c5a25085f4b06cc1caf7af66921319e192">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/b88524803ee01e6c14adee9fbf1c327d82efc86d">b88524803</a>">b88524803</a><a href="https://github.com/bigdatagenomics/adam/commit/358225c5a25085f4b06cc1caf7af66921319e192"> into 467db1ff9">467db1ff9</a>
Pull Request #1528: [ADAM-1501] Compute coverage using Dataset API.

31 of 31 new or added lines in 2 files covered. (100.0%)

5750 of 6850 relevant lines covered (83.94%)

6.69 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
82.64
 1.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
60.41
 0.51% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
77.78
 5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
98.46
 1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
96.63
 2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
67.53
 2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
86.24
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
90.16
 -1.64% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
2
90.29
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
89.17
 -0.64% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
2
65.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
80.0
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
81.63
 -0.28% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
90.74
 -2.78% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
3
91.06
 -0.46% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
6
72.08
 -1.95% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2199.1 154
83.57
2 2199.2 154
83.57
3 2199.3 154
83.66
4 2199.4 154
83.65
5 2199.5 154
83.59
6 2199.6 154
83.65
7 2199.7 154
83.59
8 2199.8 154
83.66
Source Files on build 2199
Coverage ∆ File Lines Relevant Covered Missed Hits/Line