bigdatagenomics / adam / 2813

DEFAULT BRANCH: master
Ran
Jobs 8
Files 154
Run time 2min
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jenkins

heuermh 
[ADAM-1438] Add ability to save FASTA back as a single file.

Resolves #1438. To support saving FASTA as a single file, moved the
private `writeTextRdd` method from the `FeatureRDD` to `GenomicRDD`, and opened
protections to `protected`.

14 of 14 new or added lines in 2 files covered. (100.0%)

5737 of 6833 relevant lines covered (83.96%)

6.69 hits per line

Uncovered Changes

Lines Coverage ∆ File
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala

Coverage Regressions

Lines Coverage ∆ File
8
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
4
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
Jobs
ID Job ID Ran Files Coverage
1 2813.1 0
83.69
2 2813.2 0
83.69
3 2813.3 0
83.62
4 2813.4 0
83.62
5 2813.5 0
83.64
6 2813.6 0
83.68
7 2813.7 0
83.68
8 2813.8 0
83.64
Source Files on build 2813
Detailed source file information is not available for this build.