bigdatagenomics / adam / 2190
83%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2190

Pull #1391

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/b286cf604daccc72b7a80738f39fa860941ecbc1">b286cf604<a href="https://github.com/bigdatagenomics/adam/commit/b286cf604daccc72b7a80738f39fa860941ecbc1">&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/&lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://git&quot;&gt;&amp;lt;a class=&lt;/a&gt;hub.com/bigdatagenomics/adam/commit/b286cf604daccc72b7a80738f39fa860941ecbc1&quot;&gt;b286cf604&lt;/a&gt;&lt;a href=&quot;https://github.com/bigdatagenomics/adam/commit/b286cf604daccc72b7a80738f39fa860941ecbc1&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/b286cf604daccc72b7a80738f39fa860&lt;/a&gt;941ecbc1">&quot;&gt;Merge &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/cbe0141982aa925e3a1b92f1a00d6d08d5c2dac2">cbe014198</a><a href="https://github.com/bigdatagenomics/adam/commit/b286cf604daccc72b7a80738f39fa860941ecbc1">&amp;quot;&amp;gt;cbe014198&amp;lt;/a&amp;gt;&amp;quot;&amp;gt;cbe014198&amp;lt;/a&amp;gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/b286cf604daccc72b7a80738f39fa860941ec&lt;/a&gt;bc1&quot;&gt; into &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/acb0c0731">acb0c0731">acb0c0731</a>
Pull Request #1391: [ADAM-1018] Add support for Spark SQL Datasets.

256 of 256 new or added lines in 12 files covered. (100.0%)

5616 of 6737 relevant lines covered (83.36%)

6.63 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
89.47
 1.01% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
87.5
 -2.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
2
89.19
 -1.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
4
69.36
 -4.34% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
4
84.21
 -1.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
4
88.69
 -1.04% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
5
84.43
 -4.95% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
5
71.76
 -1.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
21
81.1
 -4.28% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
90.16
 -1.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
95.83
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.81
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
82.54
 -3.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
82.05
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
90.29
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
81.1
 -4.28% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
60.41
 -1.02% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
64.94
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
72.22
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
11
69.36
 -4.34% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
30
84.43
 -4.95% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2190.1 266
82.8
2 2190.2 266
82.8
3 2190.3 266
82.81
4 2190.4 266
82.81
5 2190.5 266
82.9
6 2190.6 266
82.89
7 2190.7 266
82.89
8 2190.8 266
82.9
Source Files on build 2190
Coverage ∆ File Lines Relevant Covered Missed Hits/Line