bigdatagenomics / adam / 2803

DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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jenkins

heuermh 
[ADAM-1539] Support region predicate in TransformAlignments.

Resolves #1539.

21 of 21 new or added lines in 3 files covered. (100.0%)

5496 of 6530 relevant lines covered (84.17%)

6.69 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
89.81
 0.15% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
2
61.42
 4.59% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
61.42
 4.59% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
75.93
 1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
82.05
 -0.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
86.67
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
86.24
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
2
89.38
 4.94% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
67.53
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
13
89.81
 0.15% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
Jobs
ID Job ID Ran Files Coverage
1 2803.1 250
83.61
2 2803.2 250
83.61
3 2803.3 250
83.63
4 2803.4 250
83.63
5 2803.5 250
83.52
6 2803.6 250
83.52
7 2803.7 250
83.51
8 2803.8 250
83.51
Source Files on build 2803
Coverage ∆ File Lines Relevant Covered Missed Hits/Line