bigdatagenomics / adam / 2074
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 7
Files 152
Run time 2min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2074

Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/142e939f1b3cb0e7302289b9fab0f7d10ac59d9b">142e939f1<a href="https://github.com/bigdatagenomics/adam/commit/142e939f1b3cb0e7302289b9fab0f7d10ac59d9b">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/4291b1355ffa47743de8065173305002f2ceb3a3">4291b1355</a>">4291b1355</a><a href="https://github.com/bigdatagenomics/adam/commit/142e939f1b3cb0e7302289b9fab0f7d10ac59d9b"> into b0c5c5f82">b0c5c5f82</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

212 of 212 new or added lines in 13 files covered. (100.0%)

5349 of 6494 relevant lines covered (82.37%)

5.76 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
8
86.67
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
10
76.19
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
14
81.09
 2.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
92.23
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
60.49
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
85.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
1
99.2
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
90.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
85.17
 0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
74.07
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
54.64
 -1.09% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
4
62.34
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
9
87.38
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
10
90.41
 2.14% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
29
84.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
62
81.09
 2.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
71
67.65
 2.14% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2074.1 258
82.21
2 2074.2 258
82.23
3 2074.3 258
82.26
4 2074.4 258
82.28
5 2074.5 258
82.23
6 2074.6 258
82.28
7 2074.7 258
82.26
Source Files on build 2074
Coverage ∆ File Lines Relevant Covered Missed Hits/Line