bigdatagenomics / adam / 2073
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 1min
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2073

Pull #1522

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/2fc35e3221c45d39d44590c67c33d4b84ee58c19">2fc35e322<a href="https://github.com/bigdatagenomics/adam/commit/2fc35e3221c45d39d44590c67c33d4b84ee58c19">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/ff99571f637919b60ecbb541bce79b585455d970">ff99571f6</a>">ff99571f6</a><a href="https://github.com/bigdatagenomics/adam/commit/2fc35e3221c45d39d44590c67c33d4b84ee58c19"> into b0c5c5f82">b0c5c5f82</a>
Pull Request #1522: Adding fragment InFormatter for Bowtie tab5 format

25 of 25 new or added lines in 2 files covered. (100.0%)

5232 of 6365 relevant lines covered (82.2%)

6.57 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
90.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
67.31
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
66.38
 0.87% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
79.82
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
61.73
 1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
95.51
 2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
85.32
 0.31% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
2
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
79.85
 1.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
2
63.64
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
91.67
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
56.28
 0.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
88.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
Jobs
ID Job ID Ran Files Coverage
1 2073.1 250
82.03
2 2073.2 250
82.04
3 2073.3 250
82.03
4 2073.4 250
82.12
5 2073.5 250
82.12
6 2073.6 250
82.11
7 2073.7 250
82.11
8 2073.8 250
82.04
Source Files on build 2073
Coverage ∆ File Lines Relevant Covered Missed Hits/Line