bigdatagenomics / adam / 2072
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 149
Run time 2min
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2072

Pull #1532

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/c7603ec4757b19735016693fa322f9328bfe16b4">c7603ec47<a href="https://github.com/bigdatagenomics/adam/commit/c7603ec4757b19735016693fa322f9328bfe16b4">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/96af178562abcae832c4eb82010ce6288e932de5">96af17856</a>">96af17856</a><a href="https://github.com/bigdatagenomics/adam/commit/c7603ec4757b19735016693fa322f9328bfe16b4"> into b0c5c5f82">b0c5c5f82</a>
Pull Request #1532: Refactor Vcf2ADAM and ADAM2Vcf into TransformGenotypes and TransformVariants

86 of 86 new or added lines in 3 files covered. (100.0%)

5269 of 6363 relevant lines covered (82.81%)

6.62 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
5
86.84
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
5
86.84
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
59.26
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
84.86
 0.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
90.29
 1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
96.63
 3.37% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
61.54
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
96.92
 -3.08% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
55.19
 -0.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
87.5
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
3
90.29
 -2.91% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
4
61.04
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 2072.1 249
82.7
2 2072.2 249
82.7
3 2072.3 249
82.68
4 2072.4 249
82.7
5 2072.5 249
82.71
6 2072.6 249
82.7
7 2072.7 249
82.71
8 2072.8 249
82.68
Source Files on build 2072
Coverage ∆ File Lines Relevant Covered Missed Hits/Line