bigdatagenomics / adam / 2025
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 53s
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2025

Pull #1532

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/db37ca089dbfbe4dc3a136a4b6b3140a3bf326c1">db37ca089<a href="https://github.com/bigdatagenomics/adam/commit/db37ca089dbfbe4dc3a136a4b6b3140a3bf326c1">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/1a60973adfac480109c6824d2d3e24c3ab60d1c9">1a60973ad</a>">1a60973ad</a><a href="https://github.com/bigdatagenomics/adam/commit/db37ca089dbfbe4dc3a136a4b6b3140a3bf326c1"> into fe1cba217">fe1cba217</a>
Pull Request #1532: Refactor Vcf2ADAM and ADAM2Vcf into TransformGenotypes and TransformVariants

79 of 79 new or added lines in 3 files covered. (100.0%)

5257 of 6377 relevant lines covered (82.44%)

6.59 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
91.23
 0.84% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
5
86.84
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
6
86.05
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
67.31
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
80.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
97.78
 -1.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
88.35
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
85.02
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
60.49
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
79.82
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
84.46
 -0.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
55.19
 -1.09% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
3
70.37
 -5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
95.45
 -4.55% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
3
61.04
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
58.33
 8.33% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
4
91.23
 0.84% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
11
60.71
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
11
62.07
 -19.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
17
53.85
 5.2% adam-core/src/main/scala/org/bdgenomics/adam/rdd/TreeRegionJoin.scala
71
65.94
 -3.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
81
78.61
 -1.74% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2025.1 251
82.33
2 2025.2 251
82.34
3 2025.3 251
82.33
4 2025.4 251
82.34
5 2025.5 251
82.33
6 2025.6 251
82.34
7 2025.7 251
82.33
8 2025.8 251
82.34
Source Files on build 2025
Coverage ∆ File Lines Relevant Covered Missed Hits/Line