bigdatagenomics / adam / 2674

DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 2min
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jenkins

heuermh 
[ADAM-1497] Add union to GenomicRDD.

Resolves #1497. Also adds `size` methods to `SequenceDictionary` and
`RecordGroupDictionary`. Requires the addition of a `ClassTag` to the
`GenericGenomicRDD` case class.

48 of 48 new or added lines in 11 files covered. (100.0%)

5183 of 6302 relevant lines covered (82.24%)

6.57 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
6
69.61
 -0.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
63.64
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
92.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
94.38
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
65.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
90.38
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
1
80.0
 6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
95.83
 4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
56.28
 -1.09% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2
75.93
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
61.73
 0.48% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
89.04
 -0.68% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
3
88.24
 -1.86% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
62.34
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
85.17
 -0.46% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
5
79.82
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
39
80.35
 2.04% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2674.1 252
82.13
2 2674.2 252
82.12
3 2674.3 252
82.15
4 2674.4 252
82.13
5 2674.5 252
82.12
6 2674.6 252
82.15
7 2674.7 252
82.16
8 2674.8 252
82.16
Source Files on build 2674
Coverage ∆ File Lines Relevant Covered Missed Hits/Line