bigdatagenomics / adam / 2675

DEFAULT BRANCH: master
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Jobs 8
Files 150
Run time 5min
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jenkins

heuermh 
[ADAM-1499] Enable reuse of broadcasted objects in region join. (#1524)

* [ADAM-1499] Enable reuse of broadcasted objects in region join.

Resolves #1499.

* Addressing reviewer comments.

* Addressing documentation comments.

37 of 37 new or added lines in 2 files covered. (100.0%)

5190 of 6329 relevant lines covered (82.0%)

6.55 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
53.85
 5.2% adam-core/src/main/scala/org/bdgenomics/adam/rdd/TreeRegionJoin.scala
14
65.94
 -3.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
56.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
90.2
 1.96% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
84.46
 -0.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
96.23
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.57
 2.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
2
84.86
 -0.31% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
90.29
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
95.51
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
96.97
 -3.03% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
65.94
 -3.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
59.26
 -2.47% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
74.07
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
87.5
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
5
58.44
 -3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
7
79.1
 -1.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2675.1 251
81.96
2 2675.2 251
81.96
3 2675.3 251
81.94
4 2675.4 251
81.86
5 2675.5 251
81.94
6 2675.6 251
81.86
7 2675.7 251
81.88
8 2675.8 251
81.88
Source Files on build 2675
Coverage ∆ File Lines Relevant Covered Missed Hits/Line