bigdatagenomics / adam / 2008
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 1min
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2008

Pull #1528

jenkins

fnothaft 
[ADAM-1501] Compute coverage using Dataset API.

Resolves #1501.
Pull Request #1528: [ADAM-1501] Compute coverage using Dataset API.

13 of 13 new or added lines in 1 file covered. (100.0%)

5255 of 6953 relevant lines covered (75.58%)

6.0 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
85.32
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
92.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
98.11
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
99.24
 0.06% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
95.35
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
90.1
 2.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
88.36
 -1.37% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
2
81.82
 -3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
75.93
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
66.67
 -20.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
64.94
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
66.67
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
5
76.19
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
12
46.15
 -6.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
13
77.19
 -7.12% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
18
82.22
 -0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
24
64.86
 -6.78% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
52
80.41
 -1.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
63
66.67
 -3.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
66
55.62
 -0.67% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
73
80.35
 1.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2008.1 263
74.96
2 2008.2 263
74.94
3 2008.3 263
74.96
4 2008.4 263
74.94
5 2008.5 264
75.13
6 2008.6 264
75.12
7 2008.7 264
75.13
8 2008.8 264
75.12
Source Files on build 2008
Coverage ∆ File Lines Relevant Covered Missed Hits/Line