bigdatagenomics / adam / 2663

DEFAULT BRANCH: master
Ran
Jobs 8
Files 149
Run time 3min
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jenkins

heuermh 
[ADAM-1462] Add quality score binner.

Resolves #1462. Adds an API for binning quality scores to `AlignmentRecordRDD`
and `FragmentRDD`. Exposes this on the `Transform` CLI.

58 of 58 new or added lines in 4 files covered. (100.0%)

5121 of 6244 relevant lines covered (82.01%)

6.55 hits per line

Coverage Regressions

Lines Coverage ∆ File
7
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
1
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
Jobs
ID Job ID Ran Files Coverage
1 2663.1 0
81.85
2 2663.2 0
81.85
3 2663.3 0
81.87
4 2663.4 0
81.85
5 2663.5 0
81.87
6 2663.6 0
81.87
7 2663.7 0
81.85
8 2663.8 0
81.87
Source Files on build 2663
Detailed source file information is not available for this build.