bigdatagenomics / adam / 2006
83%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 1min
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2006

Pull #1391

jenkins

fnothaft 
WIP CoverageRDD.
Pull Request #1391: [ADAM-1018] Add support for Spark SQL Datasets.

305 of 305 new or added lines in 12 files covered. (100.0%)

5256 of 6933 relevant lines covered (75.81%)

6.0 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
80.6
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
2
81.82
 -2.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
3
76.19
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
4
64.86
 -6.78% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
4
75.44
 -8.88% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
9
78.6
 -3.68% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
11
46.15
 -6.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
14
82.22
 -0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
91
0.0
 adam-codegen/src/main/scala/org/bdgenomics/adam/codegen/DumpSchemasToProduct.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
87.5
 -6.25% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
1
54.49
 -0.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
1
98.48
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
85.47
 0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
97.75
 3.37% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
90.1
 0.99% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
92.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/Coverage.scala
1
62.5
 1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
97.78
 -1.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
62.34
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
86.24
 1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
2
75.93
 1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
81.82
 -2.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
76.19
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
3
46.15
 -6.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
9
75.44
 -8.88% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
10
82.22
 -0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
22
64.86
 -6.78% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
44
78.6
 -3.68% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
55
69.7
 -0.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
75
80.6
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2006.1 262
75.07
2 2006.2 262
75.06
3 2006.3 262
75.06
4 2006.4 262
75.07
5 2006.5 263
74.97
6 2006.6 263
74.97
7 2006.7 263
74.99
8 2006.8 263
74.99
Source Files on build 2006
Coverage ∆ File Lines Relevant Covered Missed Hits/Line