bigdatagenomics / adam / 2658

DEFAULT BRANCH: master
Ran
Jobs 8
Files 148
Run time 1min
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jenkins

heuermh 
[ADAM-1509] Adding root dir path to pipe API.

Resolves #1509. This allows the directory where the SparkFiles are copied
to be accessed and included in a piped command.

5066 of 6187 relevant lines covered (81.88%)

6.54 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
85.32
 0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
92.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
82.28
 0.42% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
2
94.38
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
61.25
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
61.54
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
61.04
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
87.38
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
74.07
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
89.11
 -2.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
84.4
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
79.3
 0.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
48
70.0
 -0.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2658.1 249
81.78
2 2658.2 249
81.82
3 2658.3 249
81.83
4 2658.4 249
81.78
5 2658.5 249
81.77
6 2658.6 249
81.77
7 2658.7 249
81.83
8 2658.8 249
81.82
Source Files on build 2658
Coverage ∆ File Lines Relevant Covered Missed Hits/Line