bigdatagenomics / adam / 2658

DEFAULT BRANCH: master
Ran
Jobs 8
Files 148
Run time 1min
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jenkins

heuermh 
[ADAM-1509] Adding root dir path to pipe API.

Resolves #1509. This allows the directory where the SparkFiles are copied
to be accessed and included in a piped command.

5066 of 6187 relevant lines covered (81.88%)

6.54 hits per line

Coverage Regressions

Lines Coverage ∆ File
48
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
4
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
Jobs
ID Job ID Ran Files Coverage
1 2658.1 0
81.78
2 2658.2 0
81.82
3 2658.3 0
81.83
4 2658.4 0
81.78
5 2658.5 0
81.77
6 2658.6 0
81.77
7 2658.7 0
81.83
8 2658.8 0
81.82
Source Files on build 2658
Detailed source file information is not available for this build.