bigdatagenomics / adam / 2664

DEFAULT BRANCH: master
Ran
Jobs 8
Files 149
Run time 1min
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2664

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jenkins

heuermh 
[ADAM-1462] Add quality score binner.

Resolves #1462. Adds an API for binning quality scores to `AlignmentRecordRDD`
and `FragmentRDD`. Exposes this on the `Transform` CLI.

58 of 58 new or added lines in 4 files covered. (100.0%)

5121 of 6244 relevant lines covered (82.01%)

6.55 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
3
85.71
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
42
82.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
67
56.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
Jobs
ID Job ID Ran Files Coverage
1 2664.1 251
81.85
2 2664.2 251
81.87
3 2664.3 251
81.87
4 2664.4 251
81.85
5 2664.5 251
81.85
6 2664.6 251
81.85
7 2664.7 251
81.87
8 2664.8 251
81.87
Source Files on build 2664
Coverage ∆ File Lines Relevant Covered Missed Hits/Line