bigdatagenomics / adam / 1993
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 1min
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1993

Pull #1522

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/48bf67d0f4cff4f2654bbf9fece425566b2b4a3f">48bf67d0f<a href="https://github.com/bigdatagenomics/adam/commit/48bf67d0f4cff4f2654bbf9fece425566b2b4a3f">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/e3084d8d0d5039a762271ebc7cee699bf5d7841d">e3084d8d0</a>">e3084d8d0</a><a href="https://github.com/bigdatagenomics/adam/commit/48bf67d0f4cff4f2654bbf9fece425566b2b4a3f"> into 18191f95f">18191f95f</a>
Pull Request #1522: Adding fragment InFormatter for Bowtie tab5 format

25 of 25 new or added lines in 2 files covered. (100.0%)

5133 of 6269 relevant lines covered (81.88%)

6.54 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
85.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
66.67
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
89.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
70.0
 -0.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
97.78
 -1.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
98.11
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
88.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
82.59
 0.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
87.5
 -6.25% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
2
72.22
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
94.38
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
85.17
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
93.02
 -3.49% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
3
81.65
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
6
58.44
 -6.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
8
78.3
 -0.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1993.1 252
81.77
2 1993.2 252
81.7
3 1993.3 252
81.77
4 1993.4 252
81.69
5 1993.5 252
81.78
6 1993.6 252
81.78
7 1993.7 252
81.7
8 1993.8 252
81.69
Source Files on build 1993
Coverage ∆ File Lines Relevant Covered Missed Hits/Line