bigdatagenomics / adam / 1988
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 2min
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1988

Pull #1391

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/7cef7ddb114714e227a2cca6b00bbc1d9d53c4a9">7cef7ddb1<a href="https://github.com/bigdatagenomics/adam/commit/7cef7ddb114714e227a2cca6b00bbc1d9d53c4a9">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/f60f21a8206dbac2385747a6506d1bb619fa48c6">f60f21a82</a>">f60f21a82</a><a href="https://github.com/bigdatagenomics/adam/commit/7cef7ddb114714e227a2cca6b00bbc1d9d53c4a9"> into 0dd09b258">0dd09b258</a>
Pull Request #1391: [ADAM-1018] Add support for Spark SQL Datasets.

322 of 322 new or added lines in 12 files covered. (100.0%)

5256 of 6937 relevant lines covered (75.77%)

6.01 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
79.85
 0.55% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
1
70.15
 0.15% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
81.82
 -2.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
3
76.19
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
4
64.86
 -6.78% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
6
74.14
 -10.18% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
9
78.97
 -3.31% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
11
46.15
 -6.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
14
82.22
 -0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
91
0.0
 adam-codegen/src/main/scala/org/bdgenomics/adam/codegen/DumpSchemasToProduct.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
98.48
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
96.63
 2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
91.09
 1.98% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
92.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/Coverage.scala
1
89.73
 -0.68% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
64.29
 -7.14% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
66.23
 5.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
55.06
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2
75.93
 1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
85.32
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
81.82
 -2.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
76.19
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
3
84.4
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
46.15
 -6.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
8
74.14
 -10.18% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
10
82.22
 -0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
22
64.86
 -6.78% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
43
78.97
 -3.31% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
46
70.15
 0.15% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
78
79.85
 0.55% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1988.1 262
75.15
2 1988.2 262
75.16
3 1988.3 262
75.16
4 1988.4 262
75.16
5 1988.5 262
75.15
6 1988.6 262
75.15
7 1988.7 262
75.16
8 1988.8 262
75.15
Source Files on build 1988
Coverage ∆ File Lines Relevant Covered Missed Hits/Line