2656

Ran 11 May 2017 11:27AM UTC

Jobs 8

Files 148

Run time 1min

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Build # 2656

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[ADAM-1483] Remove collapse parameter from AlignmentRecordRDD.toCoverage

Resolves #1483. Instead of providing a parameter in the `toCoverage` method to
allow users to collapse the coverage, makes the `toCoverage` method stupid. This
makes the `toCoverage` method simpler and the behavior easier to reason about.

Coverage Stats

16 of 16 new or added lines in 2 files covered. (100.0%)

5063 of 6184 relevant lines covered (81.87%)

6.54 hits per line

Uncovered Changes

Lines	Coverage	∆	File
7	100.0		adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala

Coverage Regressions

Lines	Coverage	File
37	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
4	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
2	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala

Jobs

ID	Job ID	Ran	Coverage
1	2656.1	11 May 2017 11:27AM UTC	81.76
2	2656.2	11 May 2017 11:27AM UTC	81.78
3	2656.3	11 May 2017 11:27AM UTC	81.76
4	2656.4	11 May 2017 11:27AM UTC	81.79
5	2656.5	11 May 2017 11:28AM UTC	81.78
6	2656.6	11 May 2017 11:28AM UTC	81.78
7	2656.7	11 May 2017 11:28AM UTC	81.79
8	2656.8	11 May 2017 11:28AM UTC	81.78

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