2655

Ran 10 May 2017 08:05PM UTC

Jobs 8

Files 148

Run time 54s

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Build # 2655

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[ADAM-1483] Remove collapse parameter from AlignmentRecordRDD.toCoverage

Resolves #1483. Instead of providing a parameter in the `toCoverage` method to
allow users to collapse the coverage, makes the `toCoverage` method stupid. This
makes the `toCoverage` method simpler and the behavior easier to reason about.

Run Details

16 of 16 new or added lines in 2 files covered. (100.0%)

5063 of 6184 relevant lines covered (81.87%)

6.54 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
7	66.67	-11.59%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala

Uncovered Existing Lines

Lines	Coverage	∆	File
1	95.45	-1.52%	adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1	85.17	0.0%	adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1	95.83	0.0%	adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1	89.73	0.0%	adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1	65.38	0.0%	adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1	86.67	-6.67%	adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1	61.04	0.0%	adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1	84.31	0.0%	adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
1	88.24	-5.88%	adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2	55.06	-0.56%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2	75.93	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3	78.8	0.5%	adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3	81.86	-0.55%	adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala

Jobs

ID	Job ID	Ran	Files	Coverage
1	2655.1	10 May 2017 08:05PM UTC	249	81.76
2	2655.2	10 May 2017 08:05PM UTC	249	81.78
3	2655.3	10 May 2017 08:05PM UTC	249	81.76
4	2655.4	10 May 2017 08:05PM UTC	249	81.78
5	2655.5	10 May 2017 08:05PM UTC	249	81.78
6	2655.6	10 May 2017 08:05PM UTC	249	81.78
7	2655.7	10 May 2017 08:06PM UTC	249	81.79
8	2655.8	10 May 2017 08:06PM UTC	249	81.79

Source Files on build 2655

Coverage	∆	File	Lines	Relevant	Covered	Missed	Hits/Line

bigdatagenomics / adam / 2655

README BADGES
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Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 2655

bigdatagenomics / adam / 2655

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 2655

README BADGES
x