2655

Ran 10 May 2017 08:05PM UTC

Jobs 8

Files 148

Run time 54s

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Build # 2655

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[ADAM-1483] Remove collapse parameter from AlignmentRecordRDD.toCoverage

Resolves #1483. Instead of providing a parameter in the `toCoverage` method to
allow users to collapse the coverage, makes the `toCoverage` method stupid. This
makes the `toCoverage` method simpler and the behavior easier to reason about.

Coverage Stats

16 of 16 new or added lines in 2 files covered. (100.0%)

5063 of 6184 relevant lines covered (81.87%)

6.54 hits per line

Uncovered Changes

Lines	Coverage	∆	File
7	100.0		adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala

Coverage Regressions

Lines	Coverage	File
3	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala

Jobs

ID	Job ID	Ran	Coverage
1	2655.1	10 May 2017 08:05PM UTC	81.76
2	2655.2	10 May 2017 08:05PM UTC	81.78
3	2655.3	10 May 2017 08:05PM UTC	81.76
4	2655.4	10 May 2017 08:05PM UTC	81.78
5	2655.5	10 May 2017 08:05PM UTC	81.78
6	2655.6	10 May 2017 08:05PM UTC	81.78
7	2655.7	10 May 2017 08:06PM UTC	81.79
8	2655.8	10 May 2017 08:06PM UTC	81.79

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bigdatagenomics / adam / 2655

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