564
79%

Ran 03 May 2017 05:29PM UTC

Jobs 2

Files 91

Run time 2min

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Build # 564

Build Type

push

travis-ci

Committed by

jmuhlich

Commit Message

Add StochKit interface (#249)

* StochKit 2 XML format exporter for PySB

Based on a interface to the python "gillespy" library by @lh64. Adapted to
remove the intermediate gillespy.Model format. Includes code from gillespy
(https://github.com/JohnAbel/gillespy) with permission from author
Brian Drawert.

* PySB interface for the StochKit stochastic simulation toolkit

Designed for the new PySB simulation class. Adapted from & inspired by the
`gillespy` library, with permission from author Brian Drawert.

* Enable multi initials support for StochKitSimulator

* Standardize on new style string formatting in stochkit.py

* Add additional arguments for StochKit tau leaping

* Add documentation for StochKitSimulator

* Add example to StochKitSimulator docstring

Coverage Stats

5501 of 7423 relevant lines covered (74.11%)

1.32 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	564.1	03 May 2017 05:31PM UTC	0	72.02	Travis Job 564.1
2	564.2	03 May 2017 05:29PM UTC	0	71.78	Travis Job 564.2

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