562
79%

Ran 03 May 2017 01:49AM UTC

Jobs 2

Files 86

Run time 28s

Badge

Embed ▾

pending completion

Build # 562

Build Type

push

travis-ci

Committed by

jmuhlich

Commit Message

Read Expression values from BNG .gdat files (#250)

* Modified pysb.bng.BngBaseInterface.read_simulation_results() to read in
header names from the .gdat file rather than set the names equal to the
names of model.observables. This is necessary because BNG can be
instructed to print function (Expression) values to the .gdat file with
the 'print_functions=1' argument. This also required changing the 'if'
statement from a check on whether model.observables exists to whether
the .gdat file exists (since, in principle, the .gdat file could contain
only functions).

* Add NFsim simulation result support

NFsim generates a .gdat (groups, i.e. observables/expressions) but not a
.cdat (species concentrations) file. I've updated read_simulation_results in
the BioNetGen interface to take into account simulation results may create
.cdat, .gdat, or both.

I've also made the .gdat file reader only open the file once for efficiency,
and added an NFsim unit test (Simulator class support coming soon).

Coverage Stats

5264 of 7103 relevant lines covered (74.11%)

1.32 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	562.1	03 May 2017 01:49AM UTC	0	71.93	Travis Job 562.1
2	562.2	03 May 2017 01:49AM UTC	0	71.67	Travis Job 562.2

Source Files on build 562

Detailed source file information is not available for this build.

LoLab-VU / pysb / 562
79%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 562

LoLab-VU / pysb / 562 79%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 562

LoLab-VU / pysb / 562
79%

README BADGES
x