bigdatagenomics / adam / 1956
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 148
Run time 48s
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1956

Pull #1491

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/f05fb006e8c5560aec80739c897e60886ea4d337">f05fb006e<a href="https://github.com/bigdatagenomics/adam/commit/f05fb006e8c5560aec80739c897e60886ea4d337">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/48b9ce0d976baaf3b22608ce09aeff6698d90a80">48b9ce0d9</a>">48b9ce0d9</a><a href="https://github.com/bigdatagenomics/adam/commit/f05fb006e8c5560aec80739c897e60886ea4d337"> into 93d17b418">93d17b418</a>
Pull Request #1491: [ADAM-1377] Adding fragment InFormatter for Bowtie tab6 format

35 of 35 new or added lines in 4 files covered. (100.0%)

5012 of 6112 relevant lines covered (82.0%)

6.55 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
86.96
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
86.67
 -6.19% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
77.78
 -7.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
89.13
 -2.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
61.25
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
86.67
 13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
2
81.65
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
81.9
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
75.47
 -1.89% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
4
62.34
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
8
53.67
 -1.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
77
79.05
 0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1956.1 248
81.84
2 1956.2 248
81.84
3 1956.3 248
81.86
4 1956.4 248
81.86
5 1956.5 248
81.92
6 1956.6 248
81.92
7 1956.7 248
81.94
8 1956.8 248
81.94
Source Files on build 1956
Coverage ∆ File Lines Relevant Covered Missed Hits/Line