bigdatagenomics / adam / 2595

DEFAULT BRANCH: master
Ran
Jobs 8
Files 146
Run time 50s
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2595

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jenkins

heuermh 
[ADAM-1488] Only increment BQSR min quality by 33 once.

Resolves #1488.

3 of 3 new or added lines in 2 files covered. (100.0%)

4927 of 6029 relevant lines covered (81.72%)

6.52 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2595.1 0
81.47
2 2595.2 0
81.47
3 2595.3 0
81.46
4 2595.4 0
81.46
5 2595.5 0
81.64
6 2595.6 0
81.64
7 2595.7 0
81.66
8 2595.8 0
81.66
Source Files on build 2595
Detailed source file information is not available for this build.