bigdatagenomics / adam / 1953
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 146
Run time 1min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
1953

Pull #1484

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/275b8d86d8a431d3ed24bc9fd9077d84c7876725">275b8d86d<a href="https://github.com/bigdatagenomics/adam/commit/275b8d86d8a431d3ed24bc9fd9077d84c7876725">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/cdcb9261c911dd59fb6992eaf4a6557040e45bab">cdcb9261c</a>">cdcb9261c</a><a href="https://github.com/bigdatagenomics/adam/commit/275b8d86d8a431d3ed24bc9fd9077d84c7876725"> into 04444aa22">04444aa22</a>
Pull Request #1484: Clean up ReferenceRegion.scala and add thresholded overlap and covers

46 of 46 new or added lines in 2 files covered. (100.0%)

4928 of 6039 relevant lines covered (81.6%)

6.52 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
5
89.84
 0.01% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
87.5
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
97.78
 -1.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
85.71
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
81.9
 -0.08% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
80.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
93.33
 6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
90.91
 -1.01% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
85.17
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
89.84
 0.01% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
2
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
54.8
 -0.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
3
68.53
 -1.52% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
3
82.57
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
67.92
 -5.66% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
4
62.34
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
14
77.66
 0.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1953.1 246
81.47
2 1953.2 246
81.47
3 1953.3 246
81.49
4 1953.4 246
81.49
5 1953.5 246
81.54
6 1953.6 246
81.52
7 1953.7 246
81.52
8 1953.8 246
81.54
Source Files on build 1953
Coverage ∆ File Lines Relevant Covered Missed Hits/Line