bigdatagenomics / adam / 2577

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Ran
Jobs 8
Files 146
Run time 1min
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2577

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jenkins

heuermh 
[ADAM-1476] Treat `.` ALT allele as symbolic non-ref.

Resolves #1476.

1 of 1 new or added line in 1 file covered. (100.0%)

4926 of 6034 relevant lines covered (81.64%)

6.52 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 2577.1 0
81.52
2 2577.2 0
81.52
3 2577.3 0
81.5
4 2577.4 0
81.5
5 2577.5 0
81.52
6 2577.6 0
81.52
7 2577.7 0
81.54
8 2577.8 0
81.54
Source Files on build 2577
Detailed source file information is not available for this build.