bigdatagenomics / adam / 1952
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 147
Run time 1min
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1952

Pull #1491

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/b1977c5ab8d1478a148aea7c7deaadcd6e149710">b1977c5ab<a href="https://github.com/bigdatagenomics/adam/commit/b1977c5ab8d1478a148aea7c7deaadcd6e149710">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/65a5b617db44f17f13c5681a3a6cd95924862451">65a5b617d</a>">65a5b617d</a><a href="https://github.com/bigdatagenomics/adam/commit/b1977c5ab8d1478a148aea7c7deaadcd6e149710"> into 04444aa22">04444aa22</a>
Pull Request #1491: [ADAM-1377] Adding fragment InFormatter for Bowtie tab6 format

35 of 35 new or added lines in 4 files covered. (100.0%)

4932 of 6056 relevant lines covered (81.44%)

6.51 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
90.29
 -1.63% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
23
0.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
65.38
 3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
77.78
 -7.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
81.47
 -0.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
89.13
 -2.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
3
54.24
 -1.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
3
71.7
 -5.66% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
87.13
 -0.99% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
63.64
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
82.57
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
6
90.29
 -1.63% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
7
77.92
 -0.78% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1952.1 247
81.29
2 1952.2 247
81.31
3 1952.3 247
81.29
4 1952.4 247
81.31
5 1952.5 247
81.37
6 1952.6 247
81.37
7 1952.7 247
81.39
8 1952.8 247
81.39
Source Files on build 1952
Coverage ∆ File Lines Relevant Covered Missed Hits/Line