bigdatagenomics / adam / 1946
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 146
Run time 1min
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1946

Pull #1487

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/db2ec2459c59c9aa511ede61baeb6ab36d57cad4">db2ec2459<a href="https://github.com/bigdatagenomics/adam/commit/db2ec2459c59c9aa511ede61baeb6ab36d57cad4">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/8082b2c22bdeb1447c46bd3b9415eaf772499d72">8082b2c22</a>">8082b2c22</a><a href="https://github.com/bigdatagenomics/adam/commit/db2ec2459c59c9aa511ede61baeb6ab36d57cad4"> into 93b32c61c">93b32c61c</a>
Pull Request #1487: [ADAM-1481] Refactor ADAMContext loadXxx methods for consistency

217 of 217 new or added lines in 14 files covered. (100.0%)

4929 of 6035 relevant lines covered (81.67%)

6.52 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
6.67
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
1
9.09
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1
3.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
2
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
3
53.67
 -1.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
36
76.35
 -0.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
1
77.36
 3.77% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
91.92
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
92.08
 5.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
60.0
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
85.17
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
69.04
 -1.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
81.12
 -0.86% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
81.65
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
61.04
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
63.46
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
4
53.67
 -1.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
45
76.35
 -0.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1946.1 246
81.51
2 1946.2 246
81.52
3 1946.3 246
81.52
4 1946.4 246
81.51
5 1946.5 246
81.61
6 1946.6 246
81.59
7 1946.7 246
81.59
8 1946.8 246
81.61
Source Files on build 1946
Coverage ∆ File Lines Relevant Covered Missed Hits/Line