bigdatagenomics / adam / 1945
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 1
Files 146
Run time 13s
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1945

Pull #1487

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/b99480b8032090dce76fdfb1cce900bb7800a5ff">b99480b80<a href="https://github.com/bigdatagenomics/adam/commit/b99480b8032090dce76fdfb1cce900bb7800a5ff">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/072ccf5008e60dc911a8986a25e5e9c0e0bcbcfc">072ccf500</a>">072ccf500</a><a href="https://github.com/bigdatagenomics/adam/commit/b99480b8032090dce76fdfb1cce900bb7800a5ff"> into 93b32c61c">93b32c61c</a>
Pull Request #1487: [ADAM-1481] Refactor ADAMContext loadXxx methods for consistency

224 of 224 new or added lines in 14 files covered. (100.0%)

4919 of 6035 relevant lines covered (81.51%)

0.82 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
6.67
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
1
9.09
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1
3.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
2
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
3
53.11
 -2.26% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
47
76.35
 -0.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
1
75.0
 -5.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
44.44
 -11.11% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichVariant.scala
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
91.92
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
69.04
 -1.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
81.12
 -0.86% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
91.09
 4.95% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
85.17
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
58.75
 -2.5% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
3
61.04
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
81.65
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
63.46
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
5
53.11
 -2.26% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
5
67.92
 -5.66% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
38
76.35
 -0.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1945.1 246
81.51
Source Files on build 1945
Coverage ∆ File Lines Relevant Covered Missed Hits/Line