bigdatagenomics / adam / 1943
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 146
Run time 50s
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1943

Pull #1487

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/fc3431a1172691dec48ce8f58f84804c2babd361">fc3431a11<a href="https://github.com/bigdatagenomics/adam/commit/fc3431a1172691dec48ce8f58f84804c2babd361">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/b7e00c3d660f148179f6297c90a8d69aff2967b4">b7e00c3d6</a>">b7e00c3d6</a><a href="https://github.com/bigdatagenomics/adam/commit/fc3431a1172691dec48ce8f58f84804c2babd361"> into 93b32c61c">93b32c61c</a>
Pull Request #1487: [ADAM-1481] Refactor ADAMContext loadXxx methods for consistency

201 of 201 new or added lines in 14 files covered. (100.0%)

4927 of 6033 relevant lines covered (81.67%)

6.52 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
6.67
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
1
9.09
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1
3.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
2
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
3
53.67
 -1.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
41
76.23
 -0.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
1
77.36
 3.77% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
91.92
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
92.08
 5.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
60.0
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
69.04
 -1.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
81.12
 -0.86% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
85.17
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
63.46
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
61.04
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
81.65
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
53.67
 -1.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
46
76.23
 -0.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1943.1 246
81.5
2 1943.2 246
81.52
3 1943.3 246
81.52
4 1943.4 246
81.5
5 1943.5 246
81.6
6 1943.6 246
81.58
7 1943.7 246
81.58
8 1943.8 246
81.6
Source Files on build 1943
Coverage ∆ File Lines Relevant Covered Missed Hits/Line