bigdatagenomics / adam / 1941
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 147
Run time 46s
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1941

Pull #1485

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/d0fb3edd7021762f878ef7a5ab66ab37dd25c38e">d0fb3edd7<a href="https://github.com/bigdatagenomics/adam/commit/d0fb3edd7021762f878ef7a5ab66ab37dd25c38e">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/2d9cb2cf30abe65feec8ac47d27efd386f07e27d">2d9cb2cf3</a>">2d9cb2cf3</a><a href="https://github.com/bigdatagenomics/adam/commit/d0fb3edd7021762f878ef7a5ab66ab37dd25c38e"> into 93b32c61c">93b32c61c</a>
Pull Request #1485: Add quality score binner

48 of 48 new or added lines in 3 files covered. (100.0%)

4975 of 6083 relevant lines covered (81.79%)

6.53 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
87.13
 0.99% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
70.05
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
60.0
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
95.45
 -1.52% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
90.91
 -1.01% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
82.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
3
73.33
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
85.32
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
4
54.95
 -0.42% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
5
77.12
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
5
79.82
 -3.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
5
61.04
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
41
82.23
 0.26% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 1941.1 248
81.64
2 1941.2 248
81.62
3 1941.3 248
81.62
4 1941.4 248
81.64
5 1941.5 248
81.64
6 1941.6 248
81.64
7 1941.7 248
81.65
8 1941.8 248
81.65
Source Files on build 1941
Coverage ∆ File Lines Relevant Covered Missed Hits/Line