bigdatagenomics / adam / 1940
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 146
Run time 59s
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1940

Pull #1484

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/9854aacbb9def3b03d2ee85d41388eb4a25c9b22">9854aacbb<a href="https://github.com/bigdatagenomics/adam/commit/9854aacbb9def3b03d2ee85d41388eb4a25c9b22">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/af70a8d420c49aea2c119f597298a29fe360a6c4">af70a8d42</a>">af70a8d42</a><a href="https://github.com/bigdatagenomics/adam/commit/9854aacbb9def3b03d2ee85d41388eb4a25c9b22"> into 93b32c61c">93b32c61c</a>
Pull Request #1484: Issue#1473 threshold overlaps

35 of 35 new or added lines in 2 files covered. (100.0%)

4944 of 6044 relevant lines covered (81.8%)

6.54 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
4
89.84
 0.01% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
55.37
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
1
67.31
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
85.71
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
81.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
91.92
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
85.17
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
2
71.7
 -1.89% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
86.14
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
60.0
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
3
66.67
 -20.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
61.04
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
78.15
 1.03% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
83.49
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
9
89.84
 0.01% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
Jobs
ID Job ID Ran Files Coverage
1 1940.1 246
81.68
2 1940.2 246
81.67
3 1940.3 246
81.72
4 1940.4 246
81.68
5 1940.5 246
81.67
6 1940.6 246
81.72
7 1940.7 246
81.7
8 1940.8 246
81.7
Source Files on build 1940
Coverage ∆ File Lines Relevant Covered Missed Hits/Line