hammerlab / adam / 57
85%
master: 78%

LAST BUILD BRANCH: 0.23.2
DEFAULT BRANCH: master
Ran
Jobs 1
Files 129
Run time 8s
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57

Pull #13

travis-ci

web-flow 
rm sparkTest wrapper
Pull Request #13: rm sparkTest wrapper

236 of 236 new or added lines in 9 files covered. (100.0%)

4744 of 5589 relevant lines covered (84.88%)

0.85 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
97.5
 3.95% src/main/scala/org/bdgenomics/adam/algorithms/consensus/Consensus.scala
1
82.08
 0.0% src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
62.16
 0.0% src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
2
95.33
 -0.07% src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
8
62.96
 -0.79% src/main/scala/org/bdgenomics/adam/rdd/ParallelFileMerger.scala
9
56.79
 -0.71% src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
11
85.65
 0.66% src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
89.9
 -1.01% src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
93.75
 -0.52% src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
95.45
 -1.52% src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
95.51
 1.12% src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
81.82
 -9.09% src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
87.95
 -1.2% src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
80.34
 0.0% src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
56.79
 -0.71% src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
82.54
 -3.17% src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
80.0
 0.0% src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
68.6
 -0.97% src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
3
63.46
 -5.77% src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
87.25
 -0.98% src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
76.0
 -0.24% src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
80.77
 -15.38% src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
6
85.65
 0.66% src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
Jobs
ID Job ID Ran Files Coverage
7 57.7 (vars="") 129
84.88
 Travis Job 57.7
Source Files on build 57
Coverage ∆ File Lines Relevant Covered Missed Hits/Line